Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RJE46_RS20160 Genome accession   NZ_CP134767
Coordinates   4185256..4186638 (-) Length   460 a.a.
NCBI ID   WP_008460107.1    Uniprot ID   A0A9W5J693
Organism   Cedecea neteri strain A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4180256..4191638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJE46_RS20150 (RJE46_20150) ettA 4182159..4183826 (+) 1668 WP_008460109.1 energy-dependent translational throttle protein EttA -
  RJE46_RS20155 (RJE46_20155) nadR 4183977..4185209 (-) 1233 WP_039290095.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  RJE46_RS20160 (RJE46_20160) radA 4185256..4186638 (-) 1383 WP_008460107.1 DNA repair protein RadA Machinery gene
  RJE46_RS20165 (RJE46_20165) serB 4186653..4187630 (-) 978 WP_039290090.1 phosphoserine phosphatase -
  RJE46_RS20170 (RJE46_20170) - 4187780..4188415 (+) 636 WP_172743974.1 YtjB family periplasmic protein -
  RJE46_RS20175 (RJE46_20175) lplA 4188490..4189506 (+) 1017 WP_311887867.1 lipoate--protein ligase LplA -
  RJE46_RS20180 (RJE46_20180) deoD 4189594..4190313 (-) 720 WP_008460099.1 purine-nucleoside phosphorylase -
  RJE46_RS20185 (RJE46_20185) deoB 4190373..4191596 (-) 1224 WP_311887868.1 phosphopentomutase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49583.22 Da        Isoelectric Point: 7.1552

>NTDB_id=883400 RJE46_RS20160 WP_008460107.1 4185256..4186638(-) (radA) [Cedecea neteri strain A2]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVSRVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICMIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKIPEGMQVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=883400 RJE46_RS20160 WP_008460107.1 4185256..4186638(-) (radA) [Cedecea neteri strain A2]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
TTGCCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCACAAGTTGCCCGCAACGAACGCCTTTCTGGCT
ATGCCGGAAGCGCGGGCGTCAGCCGGGTGCAAAAGCTTTCGGACATCAGCCTGGAAGAACTGCCACGCTTCTCCACCGGT
TTTAAAGAGTTCGACCGGGTGCTGGGCGGCGGCGTAGTGCCGGGCAGCGCCATTCTGATCGGTGGTAACCCAGGTGCAGG
GAAATCAACGCTGCTGCTGCAAACGCTCTGTAAGCTGAGCGAGCAGATGAAAACCCTGTACGTCACCGGCGAAGAGTCGC
TTCAGCAGGTGGCAATGCGCGCCCACCGTTTAGGCCTGCCGACGCAAAACCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTATGATCGCCGAGGAAGAACAGCCGAAGCTGATGGTGATCGACTCGATCCAGGTCATGCACATGGCGGATGT
GCAGTCTTCGCCGGGCAGCGTGGCCCAGGTGCGTGAAACCGCAGCTTACCTGACGCGCTTTGCAAAGACGAAAGGTGTGG
CGATCGTGATGGTCGGGCATGTCACGAAAGACGGTTCTCTGGCGGGGCCAAAAGTCCTCGAACACTGTATCGACTGTTCA
GTCATGCTAGACGGCGACGCCGATTCCCGCTTCCGTACTCTGCGCAGCCATAAAAACCGCTTTGGGGCTGTAAATGAGCT
TGGCGTGTTCGCGATGACCGAGCAGGGTCTGCGTGAAGTCAGCAACCCGTCGGCCATTTTCCTTAGCCGGGGCGATGAAG
TGACGCCGGGCAGTTCGGTGATGGTGGTTTGGGAAGGAACGCGCCCGCTGCTGGTTGAGATTCAGGCGCTGGTGGATCAG
TCGATGATGTCCAACCCTCGCCGCGTGGCCGTTGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCCGTGCTGCACCG
TCACGGCGGCCTGCAAATGGCCGATCAGGACGTGTTTGTGAACGTGGTGGGTGGCGTAAAAGTGACTGAAACCAGCGCCG
ATCTGGCATTGCTGCTGGCGATGGTGTCCAGCCTGCGCGACAGAGCCTTGCCGCAGGATTTAGTGGTGTTTGGTGAAGTC
GGGCTGGCGGGTGAAATCCGCCCGGTACCTAGTGGACAGGAGCGTATTTCTGAAGCCGCCAAACACGGCTTTAAGCGCGC
GATTGTGCCCCAGGCCAACGTACCGAAAAAAATTCCTGAAGGGATGCAGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTGTTCGACGACTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.64

99.13

0.433
  radA Streptococcus pneumoniae R6

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.64

99.13

0.433
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433