Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QDT75_RS09970 Genome accession   NZ_CP151078
Coordinates   2099868..2100503 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain PUMA0052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094868..2105503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS09945 (QDT75_09945) - 2094924..2095904 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  QDT75_RS09950 (QDT75_09950) kdsB 2095916..2096677 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QDT75_RS09955 (QDT75_09955) lpxK 2096687..2097697 (-) 1011 WP_272304328.1 tetraacyldisaccharide 4'-kinase -
  QDT75_RS09960 (QDT75_09960) msbA 2097700..2099427 (-) 1728 WP_017816454.1 lipid A export permease/ATP-binding protein MsbA -
  QDT75_RS09965 (QDT75_09965) - 2099424..2099852 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  QDT75_RS09970 (QDT75_09970) exbB 2099868..2100503 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QDT75_RS09975 (QDT75_09975) - 2100553..2101440 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  QDT75_RS09980 (QDT75_09980) - 2101437..2102219 (-) 783 WP_069371029.1 ParA family protein -
  QDT75_RS09985 (QDT75_09985) rsmG 2102241..2102873 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QDT75_RS09990 (QDT75_09990) murU 2102961..2103650 (-) 690 WP_069371028.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  QDT75_RS09995 (QDT75_09995) - 2103650..2104663 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=883397 QDT75_RS09970 WP_000264037.1 2099868..2100503(-) (exbB) [Acinetobacter baumannii strain PUMA0052]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=883397 QDT75_RS09970 WP_000264037.1 2099868..2100503(-) (exbB) [Acinetobacter baumannii strain PUMA0052]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGACACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393