Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RJE46_RS15795 Genome accession   NZ_CP134767
Coordinates   3244598..3245227 (-) Length   209 a.a.
NCBI ID   WP_311887494.1    Uniprot ID   -
Organism   Cedecea neteri strain A2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3239598..3250227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJE46_RS15780 (RJE46_15780) helD 3239831..3241885 (-) 2055 WP_311887493.1 DNA helicase IV -
  RJE46_RS15785 (RJE46_15785) - 3242016..3242462 (+) 447 WP_039291593.1 YccF domain-containing protein -
  RJE46_RS15790 (RJE46_15790) yccS 3242475..3244613 (+) 2139 WP_039296643.1 YccS family putative transporter -
  RJE46_RS15795 (RJE46_15795) sxy/tfoX 3244598..3245227 (-) 630 WP_311887494.1 TfoX/Sxy family DNA transformation protein Regulator
  RJE46_RS15800 (RJE46_15800) sulA 3245445..3245954 (+) 510 WP_085542106.1 SOS-induced cell division inhibitor SulA -
  RJE46_RS15805 (RJE46_15805) ompA 3246312..3247388 (+) 1077 WP_039291587.1 porin OmpA -
  RJE46_RS15810 (RJE46_15810) matP 3247480..3247932 (-) 453 WP_008461251.1 macrodomain Ter protein MatP -
  RJE46_RS15815 (RJE46_15815) - 3248109..3249863 (+) 1755 WP_311887495.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24140.20 Da        Isoelectric Point: 10.1786

>NTDB_id=883397 RJE46_RS15795 WP_311887494.1 3244598..3245227(-) (sxy/tfoX) [Cedecea neteri strain A2]
MKKVTFIRIHKSREYLSSLGKIGCRPLFGGYSLTVDGVVFAMVAEGDLYLRACEQCAEYFIQKSAPPLMYSKRGLPVALN
YYRVDEELWENPEKLVQLSSLALRSAQREKKQIKIRSRRLKDLPNLSLNIEVMLREVGINDPQTLQLFGAKRSWLKLRNT
RKTVGIKVLLSLAGAIRGVHEAVLPAEVRKELTEWWRCYEQRQQAYSEH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=883397 RJE46_RS15795 WP_311887494.1 3244598..3245227(-) (sxy/tfoX) [Cedecea neteri strain A2]
ATGAAAAAGGTGACATTTATTAGAATTCATAAATCACGGGAATATCTTTCGTCACTGGGGAAAATCGGTTGTCGACCGCT
ATTTGGTGGTTATAGTCTGACCGTCGACGGCGTGGTCTTTGCTATGGTGGCTGAAGGTGACCTTTATCTGCGGGCTTGTG
AACAGTGCGCGGAGTATTTTATCCAAAAATCGGCGCCTCCCCTGATGTACAGTAAACGTGGGCTTCCTGTCGCGCTGAAT
TACTATCGTGTCGATGAAGAACTTTGGGAAAATCCGGAAAAACTCGTCCAGCTCTCTTCTCTGGCGTTAAGAAGCGCCCA
ACGTGAGAAGAAACAAATCAAAATACGTTCTCGTCGCCTTAAGGACCTCCCCAATCTTTCCCTGAATATTGAAGTTATGC
TTCGTGAGGTGGGGATCAATGATCCACAAACGCTTCAACTCTTTGGTGCCAAACGGTCATGGCTAAAATTACGCAACACC
AGGAAAACGGTAGGTATTAAAGTCCTGCTCTCGCTTGCAGGTGCTATTCGTGGTGTTCATGAGGCGGTACTGCCTGCTGA
GGTTCGGAAAGAATTGACGGAATGGTGGCGCTGCTATGAGCAGCGCCAGCAAGCTTACTCTGAACACTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.846

93.301

0.502