Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RM155_RS16885 Genome accession   NZ_CP134761
Coordinates   3585230..3586612 (-) Length   460 a.a.
NCBI ID   WP_109652456.1    Uniprot ID   -
Organism   Pantoea agglomerans strain AJ2b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3580230..3591612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM155_RS16860 (RM155_16860) - 3581005..3581169 (+) 165 WP_109652447.1 YhfG family protein -
  RM155_RS16865 (RM155_16865) - 3581182..3581784 (+) 603 WP_109652450.1 Fic family protein -
  RM155_RS16870 (RM155_16870) - 3581765..3582661 (-) 897 WP_311979651.1 LysR family transcriptional regulator -
  RM155_RS16875 (RM155_16875) - 3582866..3583867 (+) 1002 WP_109652453.1 zinc-binding alcohol dehydrogenase family protein -
  RM155_RS16880 (RM155_16880) nadR 3583913..3585154 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  RM155_RS16885 (RM155_16885) radA 3585230..3586612 (-) 1383 WP_109652456.1 DNA repair protein RadA Machinery gene
  RM155_RS16890 (RM155_16890) serB 3586626..3587603 (-) 978 WP_031593286.1 phosphoserine phosphatase -
  RM155_RS16895 (RM155_16895) - 3587711..3588361 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  RM155_RS16900 (RM155_16900) yjjG 3589029..3589709 (-) 681 WP_010671712.1 pyrimidine 5'-nucleotidase -
  RM155_RS16905 (RM155_16905) rimI 3589728..3590168 (-) 441 WP_010253603.1 ribosomal protein S18-alanine N-acetyltransferase -
  RM155_RS16910 (RM155_16910) - 3590140..3590550 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49307.98 Da        Isoelectric Point: 7.6671

>NTDB_id=883385 RM155_RS16885 WP_109652456.1 3585230..3586612(-) (radA) [Pantoea agglomerans strain AJ2b]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=883385 RM155_RS16885 WP_109652456.1 3585230..3586612(-) (radA) [Pantoea agglomerans strain AJ2b]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACTGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGCAGCGCCGGAACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGTTTAGAGGCGTTACCGCGCTTCTCTACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGCATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TACAACAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCTACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGAAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGTGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCCCTGGCCGGACCGAAAGTACTGGAGCACTGTATCGACTGTTCG
GTACTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGTGTGTTTGCTATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGG
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAAGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCGGTGCTGCACCG
GCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
TATTGTACCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424