Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QDT75_RS01620 Genome accession   NZ_CP151078
Coordinates   346126..346575 (+) Length   149 a.a.
NCBI ID   WP_004745398.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341126..351575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01590 (QDT75_01590) - 341589..343694 (-) 2106 WP_279722722.1 HD domain-containing protein -
  QDT75_RS01595 (QDT75_01595) - 343734..343864 (-) 131 Protein_305 hypothetical protein -
  QDT75_RS01600 (QDT75_01600) rpoZ 343903..344181 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QDT75_RS01605 (QDT75_01605) gmk 344254..344883 (-) 630 WP_000015937.1 guanylate kinase -
  QDT75_RS01610 (QDT75_01610) ispH 345006..345956 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QDT75_RS01615 (QDT75_01615) - 345969..346217 (-) 249 Protein_309 hypothetical protein -
  QDT75_RS01620 (QDT75_01620) fimU 346126..346575 (+) 450 WP_004745398.1 GspH/FimT family pseudopilin Machinery gene
  QDT75_RS01625 (QDT75_01625) pilV 346572..347072 (+) 501 WP_031380015.1 type IV pilus modification protein PilV Machinery gene
  QDT75_RS01630 (QDT75_01630) pilW 347074..348111 (+) 1038 WP_272304270.1 PilW family protein Machinery gene
  QDT75_RS01635 (QDT75_01635) - 348108..348890 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16102.74 Da        Isoelectric Point: 9.2303

>NTDB_id=883364 QDT75_RS01620 WP_004745398.1 346126..346575(+) (fimU) [Acinetobacter baumannii strain PUMA0052]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTN
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=883364 QDT75_RS01620 WP_004745398.1 346126..346575(+) (fimU) [Acinetobacter baumannii strain PUMA0052]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTAAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTTGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

41.509

100

0.443