Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG34_RS16220 Genome accession   NZ_CP151071
Coordinates   3232647..3233276 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain 22KM0354     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227647..3238276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG34_RS16205 helD 3227889..3229943 (-) 2055 WP_001580558.1 DNA helicase IV -
  AACG34_RS16210 yccF 3230066..3230512 (+) 447 WP_001261236.1 YccF domain-containing protein -
  AACG34_RS16215 yccS 3230522..3232684 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AACG34_RS16220 sxy/tfoX 3232647..3233276 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG34_RS16225 sulA 3233495..3234004 (+) 510 WP_021520629.1 SOS-induced cell division inhibitor SulA -
  AACG34_RS16230 ompA 3234360..3235400 (+) 1041 WP_001313715.1 porin OmpA -
  AACG34_RS16235 matP 3235477..3235929 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AACG34_RS16240 ycbZ 3236115..3237875 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=883316 AACG34_RS16220 WP_000839136.1 3232647..3233276(-) (sxy/tfoX) [Escherichia coli strain 22KM0354]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=883316 AACG34_RS16220 WP_000839136.1 3232647..3233276(-) (sxy/tfoX) [Escherichia coli strain 22KM0354]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99