Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABJ91_RS17215 Genome accession   NZ_AP027634
Coordinates   3502426..3502893 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain PSJ-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497426..3507893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ91_RS17190 (VEE40_32810) rpsG 3497567..3498037 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  AABJ91_RS17195 (VEE40_32820) fusA 3498134..3500248 (+) 2115 WP_000124700.1 elongation factor G -
  AABJ91_RS17200 (VEE40_32830) tuf 3500319..3501503 (+) 1185 WP_000031783.1 elongation factor Tu -
  AABJ91_RS17205 (VEE40_32840) bfd 3501686..3501880 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AABJ91_RS17210 (VEE40_32850) bfr 3501953..3502429 (+) 477 WP_000675515.1 bacterioferritin -
  AABJ91_RS17215 (VEE40_32860) pilD 3502426..3502893 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  AABJ91_RS17220 (VEE40_32870) rpsJ 3503272..3503583 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  AABJ91_RS17225 (VEE40_32880) rplC 3503616..3504245 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  AABJ91_RS17230 (VEE40_32890) rplD 3504256..3504861 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  AABJ91_RS17235 (VEE40_32900) rplW 3504858..3505160 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  AABJ91_RS17240 (VEE40_32910) rplB 3505178..3505999 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  AABJ91_RS17245 (VEE40_32920) rpsS 3506016..3506294 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  AABJ91_RS17250 (VEE40_32930) rplV 3506309..3506641 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  AABJ91_RS17255 (VEE40_32940) rpsC 3506659..3507360 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  AABJ91_RS17260 (VEE40_32950) rplP 3507373..3507783 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=88331 AABJ91_RS17215 WP_000340171.1 3502426..3502893(-) (pilD) [Escherichia coli strain PSJ-22]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=88331 AABJ91_RS17215 WP_000340171.1 3502426..3502893(-) (pilD) [Escherichia coli strain PSJ-22]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361

Multiple sequence alignment