Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RM150_RS15835 Genome accession   NZ_CP134733
Coordinates   3402362..3403744 (-) Length   460 a.a.
NCBI ID   WP_010253610.1    Uniprot ID   -
Organism   Pantoea agglomerans strain MMD61212-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3397362..3408744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM150_RS15805 (RM150_15805) - 3398151..3398315 (+) 165 WP_109652447.1 YhfG family protein -
  RM150_RS15810 (RM150_15810) - 3398328..3398603 (+) 276 WP_198346865.1 hypothetical protein -
  RM150_RS22775 - 3398626..3398706 (+) 81 Protein_3085 cell filamentation protein Fic -
  RM150_RS15815 (RM150_15815) - 3398788..3398916 (+) 129 WP_275403523.1 hypothetical protein -
  RM150_RS15820 (RM150_15820) - 3398897..3399793 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  RM150_RS15825 (RM150_15825) - 3399998..3400999 (+) 1002 WP_167423576.1 zinc-binding alcohol dehydrogenase family protein -
  RM150_RS15830 (RM150_15830) nadR 3401045..3402286 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  RM150_RS15835 (RM150_15835) radA 3402362..3403744 (-) 1383 WP_010253610.1 DNA repair protein RadA Machinery gene
  RM150_RS15840 (RM150_15840) serB 3403758..3404735 (-) 978 WP_050680501.1 phosphoserine phosphatase -
  RM150_RS15845 (RM150_15845) - 3404843..3405493 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  RM150_RS15850 (RM150_15850) yjjG 3406158..3406838 (-) 681 WP_010253605.1 pyrimidine 5'-nucleotidase -
  RM150_RS15855 (RM150_15855) rimI 3406857..3407297 (-) 441 WP_311978142.1 ribosomal protein S18-alanine N-acetyltransferase -
  RM150_RS15860 (RM150_15860) - 3407269..3407679 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49321.96 Da        Isoelectric Point: 7.4220

>NTDB_id=883261 RM150_RS15835 WP_010253610.1 3402362..3403744(-) (radA) [Pantoea agglomerans strain MMD61212-C]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=883261 RM150_RS15835 WP_010253610.1 3402362..3403744(-) (radA) [Pantoea agglomerans strain MMD61212-C]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCTGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTAATGCACATGGCGGAGAT
CCAGTCATCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTTACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424