Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG41_RS15895 Genome accession   NZ_CP151067
Coordinates   3182508..3183137 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain 21KM1392     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177508..3188137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG41_RS15880 helD 3177750..3179804 (-) 2055 WP_001580558.1 DNA helicase IV -
  AACG41_RS15885 yccF 3179927..3180373 (+) 447 WP_001261236.1 YccF domain-containing protein -
  AACG41_RS15890 yccS 3180383..3182545 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AACG41_RS15895 sxy/tfoX 3182508..3183137 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG41_RS15900 sulA 3183356..3183865 (+) 510 WP_021520629.1 SOS-induced cell division inhibitor SulA -
  AACG41_RS15905 ompA 3184221..3185255 (+) 1035 WP_224189265.1 porin OmpA -
  AACG41_RS15910 matP 3185332..3185784 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AACG41_RS15915 ycbZ 3185970..3187730 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=883234 AACG41_RS15895 WP_000839136.1 3182508..3183137(-) (sxy/tfoX) [Escherichia coli strain 21KM1392]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=883234 AACG41_RS15895 WP_000839136.1 3182508..3183137(-) (sxy/tfoX) [Escherichia coli strain 21KM1392]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99