Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RM160_RS04445 Genome accession   NZ_CP134728
Coordinates   927509..928891 (-) Length   460 a.a.
NCBI ID   WP_061703611.1    Uniprot ID   -
Organism   Pantoea agglomerans strain ROTS050421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922509..933891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM160_RS04420 (RM160_04420) - 923284..923448 (+) 165 WP_109652447.1 YhfG family protein -
  RM160_RS04425 (RM160_04425) - 923461..924063 (+) 603 WP_033770937.1 putative adenosine monophosphate-protein transferase Fic -
  RM160_RS04430 (RM160_04430) - 924044..924940 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  RM160_RS04435 (RM160_04435) - 925145..926146 (+) 1002 WP_163639886.1 zinc-binding alcohol dehydrogenase family protein -
  RM160_RS04440 (RM160_04440) nadR 926192..927433 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  RM160_RS04445 (RM160_04445) radA 927509..928891 (-) 1383 WP_061703611.1 DNA repair protein RadA Machinery gene
  RM160_RS04450 (RM160_04450) serB 928905..929882 (-) 978 WP_033770935.1 phosphoserine phosphatase -
  RM160_RS04455 (RM160_04455) - 929990..930640 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  RM160_RS04460 (RM160_04460) yjjG 931305..931985 (-) 681 WP_124889672.1 pyrimidine 5'-nucleotidase -
  RM160_RS04465 (RM160_04465) rimI 932004..932444 (-) 441 WP_010671713.1 ribosomal protein S18-alanine N-acetyltransferase -
  RM160_RS04470 (RM160_04470) - 932416..932826 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49303.93 Da        Isoelectric Point: 7.4220

>NTDB_id=883225 RM160_RS04445 WP_061703611.1 927509..928891(-) (radA) [Pantoea agglomerans strain ROTS050421]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSIVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=883225 RM160_RS04445 WP_061703611.1 927509..928891(-) (radA) [Pantoea agglomerans strain ROTS050421]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCTACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTTACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCCGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCTATAGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

45.045

96.522

0.435
  radA Streptococcus pneumoniae Rx1

45.476

93.696

0.426
  radA Streptococcus pneumoniae D39

45.476

93.696

0.426
  radA Streptococcus pneumoniae R6

45.476

93.696

0.426
  radA Streptococcus pneumoniae TIGR4

45.476

93.696

0.426
  radA Streptococcus mitis SK321

45.476

93.696

0.426