Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG43_RS14615 Genome accession   NZ_CP151063
Coordinates   3026831..3027460 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 20KM2762     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021831..3032460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG43_RS14600 helD 3022073..3024127 (-) 2055 WP_000420533.1 DNA helicase IV -
  AACG43_RS14605 yccF 3024250..3024696 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AACG43_RS14610 yccS 3024706..3026868 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AACG43_RS14615 sxy/tfoX 3026831..3027460 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG43_RS14620 sulA 3027679..3028188 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AACG43_RS14625 ompA 3028545..3029597 (+) 1053 WP_000750419.1 porin OmpA -
  AACG43_RS14630 matP 3029672..3030124 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AACG43_RS14635 ycbZ 3030310..3032070 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=883153 AACG43_RS14615 WP_000839153.1 3026831..3027460(-) (sxy/tfoX) [Escherichia coli strain 20KM2762]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=883153 AACG43_RS14615 WP_000839153.1 3026831..3027460(-) (sxy/tfoX) [Escherichia coli strain 20KM2762]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1