Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG39_RS14600 Genome accession   NZ_CP151059
Coordinates   3026297..3026926 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 20KM2300     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021297..3031926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG39_RS14585 helD 3021539..3023593 (-) 2055 WP_000420533.1 DNA helicase IV -
  AACG39_RS14590 yccF 3023716..3024162 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AACG39_RS14595 yccS 3024172..3026334 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AACG39_RS14600 sxy/tfoX 3026297..3026926 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG39_RS14605 sulA 3027145..3027654 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AACG39_RS14610 ompA 3028011..3029063 (+) 1053 WP_000750419.1 porin OmpA -
  AACG39_RS14615 matP 3029138..3029590 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AACG39_RS14620 ycbZ 3029776..3031536 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=883071 AACG39_RS14600 WP_000839153.1 3026297..3026926(-) (sxy/tfoX) [Escherichia coli strain 20KM2300]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=883071 AACG39_RS14600 WP_000839153.1 3026297..3026926(-) (sxy/tfoX) [Escherichia coli strain 20KM2300]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1