Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RMN59_RS08110 Genome accession   NZ_CP134705
Coordinates   1720230..1720811 (+) Length   193 a.a.
NCBI ID   WP_311381785.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715230..1725811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMN59_RS08090 (RMN59_08090) - 1715629..1717389 (-) 1761 WP_311381784.1 Lon protease family protein -
  RMN59_RS08095 (RMN59_08095) matP 1717576..1718028 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RMN59_RS08100 (RMN59_08100) ompA 1718094..1719146 (-) 1053 WP_017694761.1 porin OmpA -
  RMN59_RS08105 (RMN59_08105) sulA 1719503..1720012 (-) 510 WP_032673744.1 SOS-induced cell division inhibitor SulA -
  RMN59_RS08110 (RMN59_08110) sxy/tfoX 1720230..1720811 (+) 582 WP_311381785.1 TfoX/Sxy family DNA transformation protein Regulator
  RMN59_RS08115 (RMN59_08115) yccS 1720813..1722975 (-) 2163 WP_311381786.1 YccS family putative transporter -
  RMN59_RS08120 (RMN59_08120) - 1722994..1723440 (-) 447 WP_006809342.1 YccF domain-containing protein -
  RMN59_RS08125 (RMN59_08125) helD 1723563..1725617 (+) 2055 WP_311381787.1 DNA helicase IV -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22294.76 Da        Isoelectric Point: 9.2155

>NTDB_id=883022 RMN59_RS08110 WP_311381785.1 1720230..1720811(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGHPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEEMLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=883022 RMN59_RS08110 WP_311381785.1 1720230..1720811(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
ATGAAAAAGATATCCTATGAGCGGATTTATCAATCGCAGGAATACCTCTCTCCGCTGGGTGAAATTCATCATCGCGCCCT
GTTTGGCGGCTACACCCTCGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCTTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAATGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACATCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGCCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCATTTGCGCTCGATGCTGCAAG
GAAAGAACGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATCGAGGTCCTGCTTA
TGGAGGCGGGCATCACCAACGAAGAGATGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAAAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTGGAAGGGGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.585

100

0.596