Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RJD25_RS08010 Genome accession   NZ_CP134696
Coordinates   2231158..2232594 (-) Length   478 a.a.
NCBI ID   WP_311586480.1    Uniprot ID   -
Organism   Pontibacter sp. G13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2226158..2237594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD25_RS07995 (RJD25_07995) - 2226796..2227467 (+) 672 WP_311586473.1 hypothetical protein -
  RJD25_RS08000 (RJD25_08000) - 2227547..2228827 (-) 1281 WP_311586475.1 WG repeat-containing protein -
  RJD25_RS08005 (RJD25_08005) - 2228891..2230966 (-) 2076 WP_311586478.1 ATP-binding protein -
  RJD25_RS08010 (RJD25_08010) radA 2231158..2232594 (-) 1437 WP_311586480.1 DNA repair protein RadA Machinery gene
  RJD25_RS08015 (RJD25_08015) - 2233181..2235292 (+) 2112 WP_311586483.1 helix-turn-helix domain-containing protein -
  RJD25_RS08020 (RJD25_08020) - 2235488..2236225 (+) 738 WP_311586486.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52070.22 Da        Isoelectric Point: 6.4004

>NTDB_id=882960 RJD25_RS08010 WP_311586480.1 2231158..2232594(-) (radA) [Pontibacter sp. G13]
MIRSPFHFRIRNLPYICGMAKIKTAFICQECGTQHIKWQGQCSGCQAWGSLVEEKLDPRMSGSKSSAKPGKSWTMKSAPK
PLSEIETSQEIRHLTPDAEMNRVLGGGIVPGSVTLIGGEPGIGKSTLLLQLALQLAPLNILYVSGEESESQIKMRAGRIA
YQNDNLLVATETLIERILDFMDELAPQVVVIDSIQTMYTEQIESAPGSVSQVRESTARLIRQAKDRGIPMFLVGHINKEG
SIAGPKVLEHMVDTVLTFEGDQHNSYRIVRTNKNRFGSTMEIGIYEMMAQGLREVSNPSEIFLSASDEQFSGVCISATME
GMRPLLVEIQALVSPMAYGNAQRSATGFDLRRLNMLLAVLEKRCGFKLGVQDVFINITGGLKVEDPAVDLALICAVISSL
HDLPVDPATAFAAEVGLSGEIRSISRLEPRIAEAAKLGFKTIFVAKSQVASLGKVSADIEVVGVGKLEEVFRRVFGGE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=882960 RJD25_RS08010 WP_311586480.1 2231158..2232594(-) (radA) [Pontibacter sp. G13]
ATGATCCGCAGCCCCTTTCATTTCCGAATTCGGAATCTCCCGTATATTTGTGGCATGGCGAAGATCAAAACAGCTTTCAT
TTGTCAAGAATGCGGCACCCAGCACATCAAATGGCAGGGGCAATGTAGTGGATGTCAGGCTTGGGGAAGCCTTGTCGAGG
AAAAACTCGATCCCCGCATGTCAGGTTCCAAAAGTTCTGCGAAGCCAGGCAAAAGCTGGACCATGAAATCTGCTCCCAAA
CCGCTTTCTGAGATTGAGACTTCTCAGGAAATTCGCCATCTCACTCCTGACGCAGAAATGAATCGCGTGCTGGGAGGAGG
TATCGTCCCAGGCTCGGTAACCTTGATTGGTGGTGAGCCGGGCATCGGCAAAAGTACCCTCCTCCTGCAACTGGCCCTGC
AATTGGCACCCCTCAATATCCTGTATGTGAGTGGAGAGGAATCTGAGTCTCAAATCAAGATGCGCGCAGGCAGAATTGCC
TACCAAAATGACAACTTATTGGTAGCGACAGAAACCTTGATCGAACGGATCTTGGATTTTATGGATGAATTGGCCCCGCA
AGTAGTCGTTATCGATTCCATCCAGACCATGTACACTGAGCAAATCGAATCTGCTCCGGGCTCCGTTTCGCAGGTGCGTG
AATCTACCGCAAGACTCATCCGGCAAGCCAAAGATCGAGGAATTCCCATGTTTCTGGTAGGACATATCAATAAAGAAGGG
AGTATCGCAGGACCCAAAGTCCTCGAACACATGGTGGATACGGTTTTGACCTTCGAAGGGGATCAGCACAATAGCTACCG
GATTGTCCGCACCAACAAAAACCGATTTGGTAGTACCATGGAGATCGGGATCTATGAGATGATGGCTCAGGGGCTTCGAG
AAGTCAGTAATCCGTCAGAAATCTTCCTGTCGGCATCTGATGAGCAATTCAGTGGCGTATGTATCTCAGCCACGATGGAG
GGAATGCGCCCGCTTTTGGTGGAAATTCAGGCCCTTGTCAGTCCGATGGCTTACGGCAATGCGCAGCGATCCGCCACCGG
ATTTGATTTGAGACGCCTCAACATGCTGCTTGCTGTCTTGGAGAAGCGTTGCGGATTCAAGCTGGGCGTACAAGATGTGT
TTATCAATATCACAGGCGGACTCAAGGTGGAAGATCCTGCTGTGGACCTCGCTTTGATTTGTGCCGTCATCTCATCGCTA
CACGACCTTCCTGTTGATCCAGCCACAGCTTTCGCAGCCGAAGTGGGCCTTTCGGGGGAAATTCGCTCGATTTCCCGATT
GGAACCTAGAATTGCAGAAGCTGCCAAACTCGGTTTCAAGACCATTTTTGTGGCCAAATCTCAGGTTGCAAGCCTCGGAA
AAGTTTCTGCCGATATTGAAGTGGTGGGTGTCGGTAAGTTGGAGGAAGTCTTTCGAAGGGTGTTTGGGGGAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(26-53)

AAA domain (AAA_25)

(84-240)

Subunit ChlI of Mg-chelatase (ChlI)

(362-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.061

96.444

0.502
  radA Streptococcus pneumoniae Rx1

47.598

95.816

0.456
  radA Streptococcus pneumoniae D39

47.598

95.816

0.456
  radA Streptococcus pneumoniae R6

47.598

95.816

0.456
  radA Streptococcus pneumoniae TIGR4

47.598

95.816

0.456
  radA Streptococcus mitis NCTC 12261

47.598

95.816

0.456
  radA Streptococcus mitis SK321

47.598

95.816

0.456