Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RLE12_RS27455 Genome accession   NZ_CP134695
Coordinates   5818061..5818618 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5813061..5823618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS27435 pilR 5814337..5815674 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RLE12_RS27440 thiO 5815720..5816814 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  RLE12_RS27445 - 5816949..5817458 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  RLE12_RS27450 - 5817564..5818070 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RLE12_RS27455 pilV 5818061..5818618 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RLE12_RS27460 pilW 5818615..5819439 (+) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  RLE12_RS27465 pilX 5819436..5820023 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  RLE12_RS27470 pilY1 5820035..5823526 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=882951 RLE12_RS27455 WP_003119423.1 5818061..5818618(+) (pilV) [Pseudomonas aeruginosa strain TJM4]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=882951 RLE12_RS27455 WP_003119423.1 5818061..5818618(+) (pilV) [Pseudomonas aeruginosa strain TJM4]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995