Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RJY17_RS18520 Genome accession   NZ_CP134692
Coordinates   3568657..3568941 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain B5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3563657..3573941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS18500 (RJY17_18500) - 3564900..3565808 (+) 909 WP_064115428.1 ketopantoate reductase family protein -
  RJY17_RS18505 (RJY17_18505) - 3565840..3567072 (-) 1233 WP_094032405.1 aminopeptidase -
  RJY17_RS18510 (RJY17_18510) - 3567173..3567307 (-) 135 WP_003154559.1 protein YkpC -
  RJY17_RS18515 (RJY17_18515) mreBH 3567379..3568386 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  RJY17_RS18520 (RJY17_18520) abrB 3568657..3568941 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RJY17_RS18525 (RJY17_18525) - 3569114..3570418 (+) 1305 WP_064108138.1 ATP-binding protein -
  RJY17_RS18530 (RJY17_18530) - 3570420..3571247 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  RJY17_RS18535 (RJY17_18535) ktrC 3571288..3571953 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  RJY17_RS18540 (RJY17_18540) ade 3572102..3573835 (+) 1734 WP_094032406.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=882921 RJY17_RS18520 WP_003154557.1 3568657..3568941(+) (abrB) [Bacillus velezensis strain B5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=882921 RJY17_RS18520 WP_003154557.1 3568657..3568941(+) (abrB) [Bacillus velezensis strain B5]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543