Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RJY17_RS18410 Genome accession   NZ_CP134692
Coordinates   3548161..3548757 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain B5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3543161..3553757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS18380 (RJY17_18380) - 3543375..3543830 (+) 456 WP_033574618.1 flavodoxin -
  RJY17_RS18385 (RJY17_18385) dapD 3543912..3544622 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RJY17_RS18390 (RJY17_18390) - 3544693..3545817 (+) 1125 WP_094032400.1 N-acetyldiaminopimelate deacetylase -
  RJY17_RS18395 (RJY17_18395) - 3545878..3546123 (+) 246 WP_003154596.1 YkuS family protein -
  RJY17_RS18400 (RJY17_18400) - 3546157..3546963 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  RJY17_RS18405 (RJY17_18405) - 3547251..3547709 (+) 459 WP_094032401.1 redoxin domain-containing protein -
  RJY17_RS18410 (RJY17_18410) rok 3548161..3548757 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  RJY17_RS18415 (RJY17_18415) - 3548778..3549770 (-) 993 WP_012117448.1 hypothetical protein -
  RJY17_RS18420 (RJY17_18420) - 3549916..3550518 (+) 603 WP_094032402.1 molybdenum cofactor guanylyltransferase -
  RJY17_RS18425 (RJY17_18425) - 3550570..3551589 (+) 1020 WP_094032403.1 molybdopterin-synthase adenylyltransferase MoeB -
  RJY17_RS18430 (RJY17_18430) glp 3551607..3552899 (+) 1293 WP_033574615.1 gephyrin-like molybdotransferase Glp -
  RJY17_RS18435 (RJY17_18435) mobB 3552860..3553381 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=882920 RJY17_RS18410 WP_012117447.1 3548161..3548757(+) (rok) [Bacillus velezensis strain B5]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=882920 RJY17_RS18410 WP_012117447.1 3548161..3548757(+) (rok) [Bacillus velezensis strain B5]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843