Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RJY17_RS18310 Genome accession   NZ_CP134692
Coordinates   3532296..3532760 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain B5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527296..3537760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS18290 (RJY17_18290) - 3527776..3529596 (+) 1821 WP_094032395.1 PAS domain-containing protein -
  RJY17_RS18295 (RJY17_18295) - 3529577..3530790 (-) 1214 Protein_3550 aminotransferase A -
  RJY17_RS18300 (RJY17_18300) - 3530991..3531152 (-) 162 WP_007409608.1 hypothetical protein -
  RJY17_RS18305 (RJY17_18305) cheV 3531341..3532252 (+) 912 WP_015417365.1 chemotaxis protein CheV -
  RJY17_RS18310 (RJY17_18310) kre 3532296..3532760 (-) 465 WP_003154622.1 YkyB family protein Regulator
  RJY17_RS18315 (RJY17_18315) - 3532883..3534175 (-) 1293 WP_094032396.1 MFS transporter -
  RJY17_RS18320 (RJY17_18320) - 3534251..3534745 (-) 495 WP_094032461.1 L,D-transpeptidase family protein -
  RJY17_RS18325 (RJY17_18325) - 3534820..3535683 (-) 864 WP_094032397.1 metallophosphoesterase -
  RJY17_RS18330 (RJY17_18330) fadH 3535828..3536592 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  RJY17_RS18335 (RJY17_18335) - 3536706..3537254 (+) 549 WP_094032398.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=882919 RJY17_RS18310 WP_003154622.1 3532296..3532760(-) (kre) [Bacillus velezensis strain B5]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=882919 RJY17_RS18310 WP_003154622.1 3532296..3532760(-) (kre) [Bacillus velezensis strain B5]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929