Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG47_RS15845 Genome accession   NZ_CP151050
Coordinates   3193589..3194218 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 20KM2222     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188589..3199218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG47_RS15830 helD 3188831..3190885 (-) 2055 WP_000420537.1 DNA helicase IV -
  AACG47_RS15835 yccF 3191008..3191454 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AACG47_RS15840 yccS 3191464..3193626 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AACG47_RS15845 sxy/tfoX 3193589..3194218 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG47_RS15850 sulA 3194437..3194946 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AACG47_RS15855 ompA 3195303..3196355 (+) 1053 WP_001361736.1 porin OmpA -
  AACG47_RS15860 matP 3196431..3196883 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AACG47_RS15865 ycbZ 3197069..3198829 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=882909 AACG47_RS15845 WP_000839153.1 3193589..3194218(-) (sxy/tfoX) [Escherichia coli strain 20KM2222]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=882909 AACG47_RS15845 WP_000839153.1 3193589..3194218(-) (sxy/tfoX) [Escherichia coli strain 20KM2222]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1