Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RJY17_RS16530 Genome accession   NZ_CP134692
Coordinates   3205732..3206310 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain B5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200732..3211310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS20770 - 3201232..3201747 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  RJY17_RS20775 - 3202039..3202731 (-) 693 Protein_3195 protoglobin domain-containing protein -
  RJY17_RS16515 (RJY17_16515) - 3202647..3204170 (-) 1524 WP_024085091.1 FAD-dependent oxidoreductase -
  RJY17_RS16520 (RJY17_16520) - 3204295..3205152 (+) 858 WP_003155182.1 SDR family oxidoreductase -
  RJY17_RS16525 (RJY17_16525) - 3205183..3205416 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  RJY17_RS16530 (RJY17_16530) comK 3205732..3206310 (+) 579 WP_003155179.1 competence protein ComK Regulator
  RJY17_RS16535 (RJY17_16535) - 3206455..3206823 (+) 369 WP_003155175.1 iron chaperone -
  RJY17_RS16540 (RJY17_16540) - 3206850..3207221 (+) 372 WP_311379227.1 iron chaperone -
  RJY17_RS16545 (RJY17_16545) - 3207344..3207853 (+) 510 WP_033574493.1 MepB family protein -
  RJY17_RS16550 (RJY17_16550) - 3208082..3208792 (-) 711 WP_032866163.1 YrpD family protein -
  RJY17_RS16555 (RJY17_16555) - 3208988..3209257 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  RJY17_RS16560 (RJY17_16560) - 3209290..3209607 (-) 318 WP_003155166.1 YbjQ family protein -
  RJY17_RS16565 (RJY17_16565) - 3209649..3211118 (-) 1470 WP_007409182.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=882908 RJY17_RS16530 WP_003155179.1 3205732..3206310(+) (comK) [Bacillus velezensis strain B5]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=882908 RJY17_RS16530 WP_003155179.1 3205732..3206310(+) (comK) [Bacillus velezensis strain B5]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823