Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RJY17_RS11395 Genome accession   NZ_CP134692
Coordinates   2166743..2167033 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain B5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2161743..2172033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS11355 (RJY17_11355) darA 2161760..2162089 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  RJY17_RS11360 (RJY17_11360) - 2162102..2162542 (+) 441 WP_004264730.1 YaaR family protein -
  RJY17_RS11365 (RJY17_11365) holB 2162554..2163543 (+) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  RJY17_RS11370 (RJY17_11370) ricT 2163546..2164373 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RJY17_RS11375 (RJY17_11375) yabA 2164388..2164747 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  RJY17_RS11380 (RJY17_11380) - 2164808..2165551 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RJY17_RS11385 (RJY17_11385) - 2165538..2165837 (+) 300 WP_060675321.1 GIY-YIG nuclease family protein -
  RJY17_RS11390 (RJY17_11390) rsmI 2165812..2166693 (+) 882 WP_061890392.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RJY17_RS11395 (RJY17_11395) abrB 2166743..2167033 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RJY17_RS11400 (RJY17_11400) metG 2167516..2169507 (+) 1992 WP_094032132.1 methionine--tRNA ligase -
  RJY17_RS11405 (RJY17_11405) - 2169584..2170351 (+) 768 WP_017419495.1 TatD family hydrolase -
  RJY17_RS11410 (RJY17_11410) - 2170486..2171811 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=882892 RJY17_RS11395 WP_169510469.1 2166743..2167033(-) (abrB) [Bacillus velezensis strain B5]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=882892 RJY17_RS11395 WP_169510469.1 2166743..2167033(-) (abrB) [Bacillus velezensis strain B5]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979