Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RJY17_RS04370 Genome accession   NZ_CP134692
Coordinates   793298..794050 (-) Length   250 a.a.
NCBI ID   WP_094032209.1    Uniprot ID   -
Organism   Bacillus velezensis strain B5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 788298..799050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS04345 (RJY17_04345) mreC 788734..789597 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  RJY17_RS04350 (RJY17_04350) mreB 789628..790641 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  RJY17_RS04355 (RJY17_04355) radC 790733..791428 (-) 696 WP_007408165.1 DNA repair protein RadC -
  RJY17_RS04360 (RJY17_04360) - 791460..792029 (-) 570 WP_015417926.1 nucleoside triphosphate pyrophosphatase -
  RJY17_RS04365 (RJY17_04365) - 792170..793171 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  RJY17_RS04370 (RJY17_04370) comC 793298..794050 (-) 753 WP_094032209.1 A24 family peptidase Machinery gene
  RJY17_RS04375 (RJY17_04375) - 794190..795482 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RJY17_RS04380 (RJY17_04380) - 795541..798183 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  RJY17_RS04385 (RJY17_04385) - 798636..798827 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27215.93 Da        Isoelectric Point: 9.4293

>NTDB_id=882868 RJY17_RS04370 WP_094032209.1 793298..794050(-) (comC) [Bacillus velezensis strain B5]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=882868 RJY17_RS04370 WP_094032209.1 793298..794050(-) (comC) [Bacillus velezensis strain B5]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
TTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584