Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABJ77_RS22315 Genome accession   NZ_AP027632
Coordinates   4575400..4576392 (-) Length   330 a.a.
NCBI ID   WP_338383378.1    Uniprot ID   -
Organism   Escherichia coli strain PSJ-16     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4570400..4581392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ77_RS22305 (VEE44_42530) yieP 4573292..4573984 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AABJ77_RS22310 (VEE44_42540) mdtD 4574007..4575434 (+) 1428 WP_338383377.1 multidrug transporter subunit MdtD -
  AABJ77_RS22315 (VEE44_42550) cytR 4575400..4576392 (-) 993 WP_338383378.1 ribose operon transcriptional repressor RbsR Regulator
  AABJ77_RS22320 (VEE44_42560) rbsK 4576396..4577325 (-) 930 WP_001300603.1 ribokinase -
  AABJ77_RS22325 (VEE44_42570) rbsB 4577451..4578341 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABJ77_RS22330 (VEE44_42580) rbsC 4578366..4579331 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AABJ77_RS22335 (VEE44_42590) rbsA 4579336..4580841 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AABJ77_RS22340 (VEE44_42600) rbsD 4580849..4581268 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=88271 AABJ77_RS22315 WP_338383378.1 4575400..4576392(-) (cytR) [Escherichia coli strain PSJ-16]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=88271 AABJ77_RS22315 WP_338383378.1 4575400..4576392(-) (cytR) [Escherichia coli strain PSJ-16]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGACTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-330)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.858

100

0.37
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment