Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RIK62_RS13355 Genome accession   NZ_CP134671
Coordinates   2817939..2818565 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 99202523580     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812939..2823565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK62_RS13335 (RIK62_13335) - 2813333..2815093 (-) 1761 WP_032681323.1 Lon protease family protein -
  RIK62_RS13340 (RIK62_13340) matP 2815280..2815732 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  RIK62_RS13345 (RIK62_13345) ompA 2815802..2816857 (-) 1056 WP_020884794.1 porin OmpA -
  RIK62_RS13350 (RIK62_13350) sulA 2817212..2817721 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  RIK62_RS13355 (RIK62_13355) sxy/tfoX 2817939..2818565 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  RIK62_RS13360 (RIK62_13360) yccS 2818522..2820684 (-) 2163 WP_063858514.1 YccS family putative transporter -
  RIK62_RS13365 (RIK62_13365) - 2820704..2821150 (-) 447 WP_025204535.1 YccF domain-containing protein -
  RIK62_RS13370 (RIK62_13370) helD 2821274..2823328 (+) 2055 WP_050736585.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=882684 RIK62_RS13355 WP_020884792.1 2817939..2818565(+) (sxy/tfoX) [Enterobacter ludwigii strain 99202523580]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=882684 RIK62_RS13355 WP_020884792.1 2817939..2818565(+) (sxy/tfoX) [Enterobacter ludwigii strain 99202523580]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTGATGAAACGGGGTCGCCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCACTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGTTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577