Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RIK62_RS02955 Genome accession   NZ_CP134671
Coordinates   601443..602876 (+) Length   477 a.a.
NCBI ID   WP_014171817.1    Uniprot ID   A0A839BTX8
Organism   Enterobacter ludwigii strain 99202523580     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596443..607876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK62_RS02925 (RIK62_02925) - 597010..597987 (+) 978 WP_020883528.1 calcium/sodium antiporter -
  RIK62_RS02930 (RIK62_02930) kdsD 598001..598987 (+) 987 WP_020883527.1 arabinose-5-phosphate isomerase KdsD -
  RIK62_RS02935 (RIK62_02935) kdsC 599002..599568 (+) 567 WP_032680194.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RIK62_RS02940 (RIK62_02940) lptC 599565..600140 (+) 576 WP_014171814.1 LPS export ABC transporter periplasmic protein LptC -
  RIK62_RS02945 (RIK62_02945) lptA 600109..600663 (+) 555 WP_020883526.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  RIK62_RS02950 (RIK62_02950) lptB 600670..601395 (+) 726 WP_014171816.1 LPS export ABC transporter ATP-binding protein -
  RIK62_RS02955 (RIK62_02955) rpoN/rpoN1 601443..602876 (+) 1434 WP_014171817.1 RNA polymerase factor sigma-54 Machinery gene
  RIK62_RS02960 (RIK62_02960) hpf 602899..603186 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  RIK62_RS02965 (RIK62_02965) ptsN 603269..603760 (+) 492 WP_014171819.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RIK62_RS02970 (RIK62_02970) rapZ 603806..604660 (+) 855 WP_014171820.1 RNase adapter RapZ -
  RIK62_RS02975 (RIK62_02975) npr 604657..604929 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  RIK62_RS02980 (RIK62_02980) mtgA 604968..605693 (-) 726 WP_032680193.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  RIK62_RS02985 (RIK62_02985) elbB 605690..606343 (-) 654 WP_032670144.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54206.00 Da        Isoelectric Point: 4.3224

>NTDB_id=882674 RIK62_RS02955 WP_014171817.1 601443..602876(+) (rpoN/rpoN1) [Enterobacter ludwigii strain 99202523580]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHEEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTILSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=882674 RIK62_RS02955 WP_014171817.1 601443..602876(+) (rpoN/rpoN1) [Enterobacter ludwigii strain 99202523580]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCGATTCGCCTGTTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAAGCGCTGGATAGCAATCCGTTGCTGGAGCAAGCCGATCTTCATG
AAGAGGTAGATACCCAGCAGTCGCAGGATACTGAAGCACTCGACACCGCCGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTTTATCAGGGTGAAACTACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACTGACCGCGCGATAGCGACATCCATTGTCGATGCCGTGGATGACACTGGTTATCTGACCGTCACGCTGGACGAA
ATTCTGGAAAGCATGGGTGACGAAGAGATTGAACTCGAGGAGATAGAAGCCGTTCTGAAGCGCATTCAGCGTTTCGATCC
GGTTGGGGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTTATCCAGCTTTCTCAGTTCAGCAAAGAGACACCATGGCTTG
ATGAAGCCCGCTTGATCATCAGCGACCATCTGGATCTTCTGGCCAATCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTCAATCTGATTCAGTCCCTCGATCCGCGCCCCGGTCAGTCCATTCAGACCAG
CGAACCCGAGTACGTCATCCCGGATGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGATAATCAATACATTCGT
AGCAATTTGCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTCCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTGAGCGACAGTAAGTTAACCACCATACTGTCCGACCAGGGTATTATGGTGG
CACGCCGAACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BTX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.941

100

0.486