Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RIK61_RS10195 Genome accession   NZ_CP134649
Coordinates   2163236..2163862 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 51A:C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2158236..2168862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK61_RS10175 (RIK61_10175) - 2158630..2160390 (-) 1761 WP_311383295.1 Lon protease family protein -
  RIK61_RS10180 (RIK61_10180) matP 2160577..2161029 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  RIK61_RS10185 (RIK61_10185) ompA 2161099..2162154 (-) 1056 WP_020884794.1 porin OmpA -
  RIK61_RS10190 (RIK61_10190) sulA 2162509..2163018 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  RIK61_RS10195 (RIK61_10195) sxy/tfoX 2163236..2163862 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  RIK61_RS10200 (RIK61_10200) yccS 2163819..2165981 (-) 2163 WP_020884791.1 YccS family putative transporter -
  RIK61_RS10205 (RIK61_10205) - 2166001..2166447 (-) 447 WP_025204535.1 YccF domain-containing protein -
  RIK61_RS10210 (RIK61_10210) helD 2166571..2168625 (+) 2055 WP_049023897.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=882631 RIK61_RS10195 WP_020884792.1 2163236..2163862(+) (sxy/tfoX) [Enterobacter ludwigii strain 51A:C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=882631 RIK61_RS10195 WP_020884792.1 2163236..2163862(+) (sxy/tfoX) [Enterobacter ludwigii strain 51A:C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGTTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577