Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RIL73_RS03340 Genome accession   NZ_CP134641
Coordinates   586111..587544 (+) Length   477 a.a.
NCBI ID   WP_063143582.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 42A:C     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581111..592544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIL73_RS03310 (RIL73_03310) - 581678..582655 (+) 978 WP_039260412.1 calcium/sodium antiporter -
  RIL73_RS03315 (RIL73_03315) kdsD 582669..583655 (+) 987 WP_023333606.1 arabinose-5-phosphate isomerase KdsD -
  RIL73_RS03320 (RIL73_03320) kdsC 583670..584236 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RIL73_RS03325 (RIL73_03325) lptC 584233..584808 (+) 576 WP_023309357.1 LPS export ABC transporter periplasmic protein LptC -
  RIL73_RS03330 (RIL73_03330) lptA 584777..585331 (+) 555 WP_023333608.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  RIL73_RS03335 (RIL73_03335) lptB 585338..586063 (+) 726 WP_023309359.1 LPS export ABC transporter ATP-binding protein -
  RIL73_RS03340 (RIL73_03340) rpoN/rpoN1 586111..587544 (+) 1434 WP_063143582.1 RNA polymerase factor sigma-54 Machinery gene
  RIL73_RS03345 (RIL73_03345) hpf 587567..587854 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  RIL73_RS03350 (RIL73_03350) ptsN 587937..588428 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RIL73_RS03355 (RIL73_03355) rapZ 588474..589328 (+) 855 WP_014885397.1 RNase adapter RapZ -
  RIL73_RS03360 (RIL73_03360) npr 589325..589597 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  RIL73_RS03365 (RIL73_03365) mtgA 589635..590360 (-) 726 WP_311391678.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  RIL73_RS03370 (RIL73_03370) elbB 590357..591010 (-) 654 WP_213328942.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=882583 RIL73_RS03340 WP_063143582.1 586111..587544(+) (rpoN/rpoN1) [Enterobacter asburiae strain 42A:C]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=882583 RIL73_RS03340 WP_063143582.1 586111..587544(+) (rpoN/rpoN1) [Enterobacter asburiae strain 42A:C]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCTCAGGATACAGAAGCGCTCGACACCGCGGATGCTCTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTATCTGATGTGGCAGGTGGAACTCACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAGCTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGATCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGCTGGCCAACCACGATTTCCGCTCCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCACGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTGATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAAATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCTAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482