Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RIK64_RS13415 Genome accession   NZ_CP134639
Coordinates   2838249..2838875 (+) Length   208 a.a.
NCBI ID   WP_041910603.1    Uniprot ID   A0A8E1RPS6
Organism   Enterobacter bugandensis strain 31A:C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833249..2843875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK64_RS13395 (RIK64_13395) - 2833650..2835410 (-) 1761 WP_126817651.1 Lon protease family protein -
  RIK64_RS13400 (RIK64_13400) matP 2835596..2836048 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  RIK64_RS13405 (RIK64_13405) ompA 2836112..2837167 (-) 1056 WP_108780329.1 porin OmpA -
  RIK64_RS13410 (RIK64_13410) sulA 2837522..2838031 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  RIK64_RS13415 (RIK64_13415) sxy/tfoX 2838249..2838875 (+) 627 WP_041910603.1 TfoX/Sxy family DNA transformation protein Regulator
  RIK64_RS13420 (RIK64_13420) yccS 2838832..2840994 (-) 2163 WP_126817649.1 YccS family putative transporter -
  RIK64_RS13425 (RIK64_13425) - 2841014..2841460 (-) 447 WP_041910601.1 YccF domain-containing protein -
  RIK64_RS13430 (RIK64_13430) helD 2841584..2843638 (+) 2055 WP_045261704.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.61 Da        Isoelectric Point: 9.2151

>NTDB_id=882572 RIK64_RS13415 WP_041910603.1 2838249..2838875(+) (sxy/tfoX) [Enterobacter bugandensis strain 31A:C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=882572 RIK64_RS13415 WP_041910603.1 2838249..2838875(+) (sxy/tfoX) [Enterobacter bugandensis strain 31A:C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGCTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553