Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RIK66_RS15185 Genome accession   NZ_CP134635
Coordinates   2977140..2977766 (-) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 93A:C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972140..2982766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK66_RS15170 (RIK66_15170) helD 2972377..2974431 (-) 2055 WP_063925134.1 DNA helicase IV -
  RIK66_RS15175 (RIK66_15175) - 2974555..2975001 (+) 447 WP_014169434.1 YccF domain-containing protein -
  RIK66_RS15180 (RIK66_15180) yccS 2975021..2977183 (+) 2163 WP_063925135.1 YccS family putative transporter -
  RIK66_RS15185 (RIK66_15185) sxy/tfoX 2977140..2977766 (-) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  RIK66_RS15190 (RIK66_15190) sulA 2977984..2978493 (+) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  RIK66_RS15195 (RIK66_15195) ompA 2978848..2979903 (+) 1056 WP_020884794.1 porin OmpA -
  RIK66_RS15200 (RIK66_15200) matP 2979973..2980425 (-) 453 WP_014169429.1 macrodomain Ter protein MatP -
  RIK66_RS15205 (RIK66_15205) - 2980612..2982372 (+) 1761 WP_063925136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=882501 RIK66_RS15185 WP_020884792.1 2977140..2977766(-) (sxy/tfoX) [Enterobacter ludwigii strain 93A:C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=882501 RIK66_RS15185 WP_020884792.1 2977140..2977766(-) (sxy/tfoX) [Enterobacter ludwigii strain 93A:C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGCCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATTACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577