Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RIF00_RS21070 Genome accession   NZ_CP134602
Coordinates   4604898..4605533 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain L2890     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4599898..4610533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF00_RS21040 (RIF00_21040) murB 4600995..4602014 (-) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -
  RIF00_RS21045 (RIF00_21045) - 4602011..4602475 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  RIF00_RS21050 (RIF00_21050) kdsB 4602475..4603239 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RIF00_RS21055 (RIF00_21055) - 4603236..4603421 (-) 186 WP_003247142.1 Trm112 family protein -
  RIF00_RS21060 (RIF00_21060) lpxK 4603466..4604467 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  RIF00_RS21065 (RIF00_21065) - 4604467..4604901 (-) 435 WP_003247134.1 biopolymer transporter ExbD -
  RIF00_RS21070 (RIF00_21070) exbB 4604898..4605533 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RIF00_RS21075 (RIF00_21075) comA 4605689..4607905 (-) 2217 WP_098089155.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RIF00_RS21080 (RIF00_21080) - 4608048..4608554 (+) 507 Protein_4148 DUF2062 domain-containing protein -
  RIF00_RS21085 (RIF00_21085) - 4608564..4609343 (-) 780 WP_003247128.1 ABC transporter permease -
  RIF00_RS21090 (RIF00_21090) - 4609340..4610272 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=882295 RIF00_RS21070 WP_003247132.1 4604898..4605533(-) (exbB) [Pseudomonas putida strain L2890]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=882295 RIF00_RS21070 WP_003247132.1 4604898..4605533(-) (exbB) [Pseudomonas putida strain L2890]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825