Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RLT86_RS01310 Genome accession   NZ_CP134601
Coordinates   277890..278216 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain XH1022     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 272890..283216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT86_RS01285 (RLT86_01285) hemC 273507..274424 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  RLT86_RS01290 (RLT86_01290) - 274429..275196 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  RLT86_RS01295 (RLT86_01295) - 275205..276044 (+) 840 WP_005129863.1 hypothetical protein -
  RLT86_RS01300 (RLT86_01300) - 276054..277247 (+) 1194 WP_000681777.1 hypothetical protein -
  RLT86_RS01305 (RLT86_01305) - 277255..277695 (+) 441 WP_000661569.1 thioesterase family protein -
  RLT86_RS01310 (RLT86_01310) hns 277890..278216 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RLT86_RS01315 (RLT86_01315) gspN 278549..279292 (+) 744 WP_005129860.1 type II secretion system protein N -
  RLT86_RS01320 (RLT86_01320) - 279292..280128 (+) 837 WP_000870031.1 type II secretion system protein N -
  RLT86_RS01325 (RLT86_01325) gspD 280170..282440 (+) 2271 WP_001196432.1 type II secretion system secretin GspD -
  RLT86_RS01330 (RLT86_01330) - 282481..283110 (+) 630 WP_004748515.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=882245 RLT86_RS01310 WP_000801427.1 277890..278216(+) (hns) [Acinetobacter baumannii strain XH1022]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=882245 RLT86_RS01310 WP_000801427.1 277890..278216(+) (hns) [Acinetobacter baumannii strain XH1022]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1