Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RKQ54_RS01390 Genome accession   NZ_CP134589
Coordinates   283818..284144 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain XH1024     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 278492..283260 283818..284144 flank 558


Gene organization within MGE regions


Location: 278492..284144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS01360 (RKQ54_01360) - 279624..280016 (+) 393 WP_002017443.1 type IIL restriction-modification enzyme MmeI -
  RKQ54_RS01365 (RKQ54_01365) - 280024..280491 (+) 468 Protein_260 DNA helicase -
  RKQ54_RS01370 (RKQ54_01370) - 280473..281138 (+) 666 Protein_261 ATP-binding protein -
  RKQ54_RS01375 (RKQ54_01375) - 281243..282064 (-) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  RKQ54_RS01380 (RKQ54_01380) - 282170..283260 (+) 1091 WP_087486612.1 IS4-like element ISAba1 family transposase -
  RKQ54_RS01385 (RKQ54_01385) - 283279..283623 (+) 345 Protein_264 acyl-CoA thioesterase -
  RKQ54_RS01390 (RKQ54_01390) hns 283818..284144 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=881916 RKQ54_RS01390 WP_000801427.1 283818..284144(+) (hns) [Acinetobacter baumannii strain XH1024]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881916 RKQ54_RS01390 WP_000801427.1 283818..284144(+) (hns) [Acinetobacter baumannii strain XH1024]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1