Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   RKQ55_RS15420 Genome accession   NZ_CP134586
Coordinates   3230142..3230942 (-) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3225142..3235942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS15400 (RKQ55_15435) - 3226207..3226905 (-) 699 WP_005129738.1 tetratricopeptide repeat protein -
  RKQ55_RS15405 (RKQ55_15440) hisS 3226934..3228226 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  RKQ55_RS15410 (RKQ55_15445) ispG 3228223..3229338 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  RKQ55_RS15415 (RKQ55_15450) - 3229360..3230151 (-) 792 WP_005129742.1 RodZ domain-containing protein -
  RKQ55_RS15420 (RKQ55_15455) pilF 3230142..3230942 (-) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  RKQ55_RS15425 (RKQ55_15460) rlmN 3230958..3232190 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RKQ55_RS15430 (RKQ55_15465) ndk 3232313..3232744 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  RKQ55_RS15435 (RKQ55_15470) iscX 3232858..3233058 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  RKQ55_RS15440 (RKQ55_15475) - 3233158..3233709 (-) 552 WP_005129748.1 phosphatase PAP2 family protein -
  RKQ55_RS15445 (RKQ55_15480) - 3233734..3235032 (-) 1299 WP_086374126.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=881892 RKQ55_RS15420 WP_004738086.1 3230142..3230942(-) (pilF) [Acinetobacter baumannii strain XH1026]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=881892 RKQ55_RS15420 WP_004738086.1 3230142..3230942(-) (pilF) [Acinetobacter baumannii strain XH1026]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCCCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726