Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RKQ58_RS17245 Genome accession   NZ_CP134579
Coordinates   3379278..3379604 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain XH1034     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374278..3384604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS17225 (RKQ58_17220) - 3374379..3375008 (-) 630 WP_002058846.1 FHA domain-containing protein -
  RKQ58_RS17230 (RKQ58_17225) gspD 3375049..3377325 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  RKQ58_RS17235 (RKQ58_17230) - 3377367..3378203 (-) 837 WP_000870031.1 type II secretion system protein N -
  RKQ58_RS17240 (RKQ58_17235) gspN 3378203..3378946 (-) 744 WP_000730343.1 type II secretion system protein N -
  RKQ58_RS17245 (RKQ58_17240) hns 3379278..3379604 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RKQ58_RS17250 (RKQ58_17245) - 3379799..3380239 (-) 441 WP_000661569.1 thioesterase family protein -
  RKQ58_RS17255 (RKQ58_17250) - 3380247..3381440 (-) 1194 WP_000681777.1 hypothetical protein -
  RKQ58_RS17260 (RKQ58_17255) - 3381450..3382289 (-) 840 WP_001230207.1 hypothetical protein -
  RKQ58_RS17265 (RKQ58_17260) - 3382298..3383065 (-) 768 WP_000897417.1 uroporphyrinogen-III synthase -
  RKQ58_RS17270 (RKQ58_17265) hemC 3383070..3383987 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=881757 RKQ58_RS17245 WP_000801427.1 3379278..3379604(-) (hns) [Acinetobacter baumannii strain XH1034]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881757 RKQ58_RS17245 WP_000801427.1 3379278..3379604(-) (hns) [Acinetobacter baumannii strain XH1034]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1