Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RKQ58_RS03285 Genome accession   NZ_CP134579
Coordinates   472885..473769 (+) Length   294 a.a.
NCBI ID   WP_032049507.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467885..478769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS03260 (RKQ58_03260) - 468284..469531 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  RKQ58_RS03265 (RKQ58_03265) wrbA 469819..470412 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  RKQ58_RS03270 (RKQ58_03270) - 470465..471040 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  RKQ58_RS03275 (RKQ58_03275) - 471113..471826 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  RKQ58_RS03280 (RKQ58_03280) - 471983..472654 (-) 672 WP_001193960.1 hypothetical protein -
  RKQ58_RS03285 (RKQ58_03285) tonB2 472885..473769 (+) 885 WP_032049507.1 energy transducer TonB Machinery gene
  RKQ58_RS03290 (RKQ58_03290) ybeY 473859..474335 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  RKQ58_RS03295 (RKQ58_03295) - 474345..475433 (-) 1089 WP_272376855.1 PhoH family protein -
  RKQ58_RS03300 (RKQ58_03300) miaB 475471..476922 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33650.54 Da        Isoelectric Point: 9.0935

>NTDB_id=881735 RKQ58_RS03285 WP_032049507.1 472885..473769(+) (tonB2) [Acinetobacter baumannii strain XH1034]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAVYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=881735 RKQ58_RS03285 WP_032049507.1 472885..473769(+) (tonB2) [Acinetobacter baumannii strain XH1034]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGTTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997