Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AABD46_RS07935 Genome accession   NZ_CP150947
Coordinates   1688309..1689853 (+) Length   514 a.a.
NCBI ID   WP_005455006.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-202212     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683309..1694853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD46_RS07910 (AABD46_07910) - 1683610..1683930 (+) 321 WP_005454817.1 STAS domain-containing protein -
  AABD46_RS07915 (AABD46_07915) - 1683957..1684859 (+) 903 WP_005491469.1 OmpA family protein -
  AABD46_RS07920 (AABD46_07920) - 1684892..1686958 (+) 2067 WP_229614932.1 SLBB domain-containing protein -
  AABD46_RS07925 (AABD46_07925) - 1686958..1687644 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  AABD46_RS07930 (AABD46_07930) - 1687657..1688037 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  AABD46_RS07935 (AABD46_07935) luxO 1688309..1689853 (+) 1545 WP_005455006.1 sigma-54 dependent transcriptional regulator Regulator
  AABD46_RS07940 (AABD46_07940) - 1689828..1690898 (+) 1071 WP_047733617.1 glycosyltransferase family 4 protein -
  AABD46_RS07945 (AABD46_07945) - 1691049..1692233 (+) 1185 WP_025524677.1 glycosyltransferase -
  AABD46_RS07950 (AABD46_07950) - 1692244..1693416 (+) 1173 WP_024699474.1 glycosyltransferase family 4 protein -
  AABD46_RS07955 (AABD46_07955) - 1693409..1694839 (+) 1431 WP_065767966.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57403.25 Da        Isoelectric Point: 5.8567

>NTDB_id=881689 AABD46_RS07935 WP_005455006.1 1688309..1689853(+) (luxO) [Vibrio parahaemolyticus strain vp-HL-202212]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEAPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=881689 AABD46_RS07935 WP_005455006.1 1688309..1689853(+) (luxO) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTTTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACAAACACAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477