Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RKQ62_RS16420 Genome accession   NZ_CP134566
Coordinates   3398255..3398581 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain XH1038     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393255..3403581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS16400 (RKQ62_16455) - 3393356..3393985 (-) 630 WP_000219964.1 FHA domain-containing protein -
  RKQ62_RS16405 (RKQ62_16460) gspD 3394026..3396302 (-) 2277 WP_017897091.1 type II secretion system secretin GspD -
  RKQ62_RS16410 (RKQ62_16465) - 3396344..3397180 (-) 837 WP_000870031.1 type II secretion system protein N -
  RKQ62_RS16415 (RKQ62_16470) gspN 3397180..3397923 (-) 744 WP_000730343.1 type II secretion system protein N -
  RKQ62_RS16420 (RKQ62_16475) hns 3398255..3398581 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RKQ62_RS16425 (RKQ62_16480) - 3398776..3399216 (-) 441 WP_000661569.1 thioesterase family protein -
  RKQ62_RS16430 (RKQ62_16485) - 3399224..3400417 (-) 1194 WP_000681773.1 hypothetical protein -
  RKQ62_RS16435 (RKQ62_16490) - 3400427..3401266 (-) 840 WP_001230196.1 hypothetical protein -
  RKQ62_RS16440 (RKQ62_16495) - 3401275..3402042 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  RKQ62_RS16445 (RKQ62_16500) hemC 3402047..3402964 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=881578 RKQ62_RS16420 WP_000801427.1 3398255..3398581(-) (hns) [Acinetobacter baumannii strain XH1038]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881578 RKQ62_RS16420 WP_000801427.1 3398255..3398581(-) (hns) [Acinetobacter baumannii strain XH1038]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1