NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	RKQ64_RS00615	Genome accession	NZ_CP134564
Coordinates	28571..29725 (+)	Length	384 a.a.
NCBI ID	WP_000755281.1	Uniprot ID	A0A059ZKS3
Organism	Acinetobacter baumannii strain XH1040
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 23571..34725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ64_RS00590 (RKQ64_00590)	-	23723..24937 (+)	1215	WP_001177965.1	oxygenase MpaB family protein	-
RKQ64_RS00595 (RKQ64_00595)	-	25007..25213 (-)	207	WP_000182542.1	hypothetical protein	-
RKQ64_RS00600 (RKQ64_00600)	-	25267..27381 (-)	2115	WP_001120663.1	TonB-dependent copper receptor	-
RKQ64_RS00605 (RKQ64_00605)	-	27453..27881 (-)	429	WP_000231985.1	DUF2946 family protein	-
RKQ64_RS00610 (RKQ64_00610)	def	27918..28448 (-)	531	WP_001196539.1	peptide deformylase	-
RKQ64_RS00615 (RKQ64_00615)	tsaP	28571..29725 (+)	1155	WP_000755281.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
RKQ64_RS00620 (RKQ64_00620)	dprA	29746..30876 (+)	1131	WP_002017176.1	DNA-processing protein DprA	Machinery gene
RKQ64_RS00625 (RKQ64_00625)	-	30927..31496 (+)	570	WP_000633612.1	L-threonylcarbamoyladenylate synthase	-
RKQ64_RS00630 (RKQ64_00630)	-	31888..32808 (-)	921	WP_002000451.1	DMT family transporter	-
RKQ64_RS00635 (RKQ64_00635)	-	32914..33564 (-)	651	WP_001984979.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

Download Length: 384 a.a. Molecular weight: 42350.28 Da Isoelectric Point: 8.5816

                                >NTDB_id=881450 RKQ64_RS00615 WP_000755281.1 28571..29725(+) (tsaP) [Acinetobacter baumannii strain XH1040]

MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP

EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE

NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS

SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ

VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide

Download Length: 1155 bp

                                >NTDB_id=881450 RKQ64_RS00615 WP_000755281.1 28571..29725(+) (tsaP) [Acinetobacter baumannii strain XH1040]

ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC

AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC

CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT

GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA

TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC

TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG

AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG

AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT

ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT

TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCCTGA

AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA

TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA

GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT

TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG

GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A059ZKS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	99.479	100	0.995

Detailed information NTG0881450