Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ66_RS04125 Genome accession   NZ_CP134560
Coordinates   879685..880158 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain XH1042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 874685..885158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ66_RS04110 (RKQ66_04110) pilX 877314..878132 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ66_RS04115 (RKQ66_04115) pilW 878129..879130 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKQ66_RS04120 (RKQ66_04120) pilV 879131..879691 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKQ66_RS04125 (RKQ66_04125) fimU 879685..880158 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ66_RS04130 (RKQ66_04130) ispH 880328..881278 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ66_RS04135 (RKQ66_04135) gmk 881401..882030 (+) 630 WP_000015937.1 guanylate kinase -
  RKQ66_RS04140 (RKQ66_04140) rpoZ 882103..882381 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ66_RS04145 (RKQ66_04145) - 882420..882549 (+) 130 Protein_800 hypothetical protein -
  RKQ66_RS04150 (RKQ66_04150) - 882589..884694 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=881368 RKQ66_RS04125 WP_001214061.1 879685..880158(-) (fimU) [Acinetobacter baumannii strain XH1042]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881368 RKQ66_RS04125 WP_001214061.1 879685..880158(-) (fimU) [Acinetobacter baumannii strain XH1042]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987