Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ67_RS10985 Genome accession   NZ_CP134558
Coordinates   2276842..2277660 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2271842..2282660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ67_RS10950 (RKQ67_10950) - 2272425..2272554 (-) 130 Protein_2131 hypothetical protein -
  RKQ67_RS10955 (RKQ67_10955) rpoZ 2272593..2272871 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ67_RS10960 (RKQ67_10960) gmk 2272944..2273573 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ67_RS10965 (RKQ67_10965) ispH 2273696..2274646 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ67_RS10970 (RKQ67_10970) fimU 2274816..2275289 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ67_RS10975 (RKQ67_10975) pilV 2275283..2275843 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKQ67_RS10980 (RKQ67_10980) pilW 2275844..2276845 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKQ67_RS10985 (RKQ67_10985) pilX 2276842..2277660 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ67_RS10990 (RKQ67_10990) pilY1 2277672..2281526 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ67_RS10995 (RKQ67_10995) pilY2 2281539..2282021 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  RKQ67_RS11000 (RKQ67_11000) pilE 2282018..2282443 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=881343 RKQ67_RS10985 WP_000149374.1 2276842..2277660(+) (pilX) [Acinetobacter baumannii strain XH1043]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881343 RKQ67_RS10985 WP_000149374.1 2276842..2277660(+) (pilX) [Acinetobacter baumannii strain XH1043]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993