Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RKQ69_RS17185 Genome accession   NZ_CP134553
Coordinates   3618098..3618424 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter baumannii strain XH1045     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613098..3623424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ69_RS17165 (RKQ69_17180) - 3613199..3613828 (-) 630 WP_000219966.1 FHA domain-containing protein -
  RKQ69_RS17170 (RKQ69_17185) gspD 3613869..3616145 (-) 2277 WP_005133330.1 type II secretion system secretin GspD -
  RKQ69_RS17175 (RKQ69_17190) - 3616187..3617023 (-) 837 WP_000870031.1 type II secretion system protein N -
  RKQ69_RS17180 (RKQ69_17195) gspN 3617023..3617766 (-) 744 WP_004710896.1 type II secretion system protein N -
  RKQ69_RS17185 (RKQ69_17200) hns 3618098..3618424 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  RKQ69_RS17190 (RKQ69_17205) - 3618619..3619059 (-) 441 WP_005133332.1 thioesterase family protein -
  RKQ69_RS17195 (RKQ69_17210) - 3619067..3620260 (-) 1194 WP_005133333.1 hypothetical protein -
  RKQ69_RS17200 (RKQ69_17215) - 3620270..3621109 (-) 840 WP_001230201.1 hypothetical protein -
  RKQ69_RS17205 (RKQ69_17220) - 3621118..3621885 (-) 768 WP_000897424.1 uroporphyrinogen-III synthase -
  RKQ69_RS17210 (RKQ69_17225) hemC 3621890..3622807 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=881254 RKQ69_RS17185 WP_002053185.1 3618098..3618424(-) (hns) [Acinetobacter baumannii strain XH1045]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881254 RKQ69_RS17185 WP_002053185.1 3618098..3618424(-) (hns) [Acinetobacter baumannii strain XH1045]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAAAAAACAACACGTAAATCTGTAGAACCACGCTACCGTAACAAAAACAACTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATCGAAAAGGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991