Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RKQ70_RS17535 Genome accession   NZ_CP134552
Coordinates   3657410..3657736 (-) Length   108 a.a.
NCBI ID   WP_245103125.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1047     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652410..3662736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ70_RS17515 (RKQ70_17530) - 3652510..3653139 (-) 630 WP_000219967.1 FHA domain-containing protein -
  RKQ70_RS17520 (RKQ70_17535) gspD 3653180..3655456 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  RKQ70_RS17525 (RKQ70_17540) - 3655498..3656334 (-) 837 WP_000870031.1 type II secretion system protein N -
  RKQ70_RS17530 (RKQ70_17545) gspN 3656334..3657077 (-) 744 WP_000730342.1 type II secretion system protein N -
  RKQ70_RS17535 (RKQ70_17550) hns 3657410..3657736 (-) 327 WP_245103125.1 H-NS family nucleoid-associated regulatory protein Regulator
  RKQ70_RS17540 (RKQ70_17555) - 3657931..3658371 (-) 441 WP_000661569.1 thioesterase family protein -
  RKQ70_RS17545 (RKQ70_17560) - 3658379..3659572 (-) 1194 WP_000681771.1 hypothetical protein -
  RKQ70_RS17550 (RKQ70_17565) - 3659582..3660421 (-) 840 WP_001230201.1 hypothetical protein -
  RKQ70_RS17555 (RKQ70_17570) - 3660430..3661197 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  RKQ70_RS17560 (RKQ70_17575) hemC 3661202..3662119 (-) 918 WP_031944408.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12461.14 Da        Isoelectric Point: 5.3496

>NTDB_id=881206 RKQ70_RS17535 WP_245103125.1 3657410..3657736(-) (hns) [Acinetobacter baumannii strain XH1047]
MKPDISELSVEELKRLQEEAEALIASKKDQAIQDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881206 RKQ70_RS17535 WP_245103125.1 3657410..3657736(-) (hns) [Acinetobacter baumannii strain XH1047]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCCAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991