Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B0E36_RS15375 Genome accession   NZ_CP150879
Coordinates   3588659..3589342 (+) Length   227 a.a.
NCBI ID   WP_093591377.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3583659..3594342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS15360 sigJ 3583789..3584733 (+) 945 WP_191892301.1 RNA polymerase sigma factor SigJ -
  B0E36_RS15365 - 3584881..3586131 (+) 1251 WP_191892300.1 FAD-dependent oxidoreductase -
  B0E36_RS15370 - 3586266..3588662 (+) 2397 WP_349411134.1 histidine kinase -
  B0E36_RS15375 vraR 3588659..3589342 (+) 684 WP_093591377.1 response regulator transcription factor Regulator
  B0E36_RS15380 - 3589431..3589766 (+) 336 WP_006138498.1 hypothetical protein -
  B0E36_RS15385 - 3589937..3591616 (+) 1680 WP_349411135.1 hypothetical protein -
  B0E36_RS15390 - 3591687..3592163 (+) 477 WP_093591371.1 GNAT family N-acetyltransferase -
  B0E36_RS15395 - 3592166..3592822 (-) 657 WP_191892306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 23843.50 Da        Isoelectric Point: 6.6525

>NTDB_id=880968 B0E36_RS15375 WP_093591377.1 3588659..3589342(+) (vraR) [Streptomyces sp. MH191]
MTLRVLVADDQGVVRAGFAAVIDAEEDMTVVGEAADGAAAVRLTGELAPDVVVMDIRMPELDGIAATRLITGRPDGPRVL
VLTTFDLDAHVFDALRAGASGFLLKDVHAAELLRGIRIVAAGESVLAPSATRRLLRHYAGRPSSGIETGRVPAELNRLTA
RERSVLGLLASGLNNTEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLGLARPHPPGTSL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=880968 B0E36_RS15375 WP_093591377.1 3588659..3589342(+) (vraR) [Streptomyces sp. MH191]
ATGACACTGCGGGTGCTGGTCGCCGACGACCAGGGCGTCGTACGGGCGGGATTCGCCGCCGTGATCGACGCCGAGGAGGA
CATGACCGTCGTCGGCGAGGCCGCCGACGGGGCCGCGGCCGTCCGGCTCACCGGGGAACTGGCACCCGACGTGGTCGTCA
TGGACATCCGCATGCCGGAGCTGGACGGCATCGCCGCCACCCGGCTGATCACCGGTCGCCCCGACGGGCCCCGCGTCCTC
GTCCTCACCACCTTCGACCTCGACGCCCACGTCTTCGACGCGCTCCGCGCCGGCGCCTCCGGCTTCCTCCTCAAGGACGT
GCACGCCGCCGAACTGCTGCGCGGGATACGGATCGTGGCGGCCGGCGAGAGCGTCCTCGCACCCTCGGCGACCCGCCGGC
TCCTGCGGCACTACGCGGGCCGGCCCTCCTCCGGCATCGAGACCGGCCGGGTCCCCGCCGAGCTGAACCGGCTGACGGCG
CGGGAGCGTTCGGTGCTCGGCCTCCTCGCCTCCGGCCTCAACAACACCGAGATCGCCGCCGACCTCGGCATCACCGTCGG
CACGGTGAAGTCCCACGTCAACGCGGTACTGCGCAAACTCGCGCTGCGCGACCGGGTGCAGGCCACGATCCTCGCCTACG
ACCTGGGGCTCGCCCGGCCCCATCCCCCGGGCACGTCCCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.273

96.916

0.361