Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ76_RS13340 Genome accession   NZ_CP134540
Coordinates   2788707..2789525 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2783707..2794525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ76_RS13325 (RKQ76_13335) pilE 2783924..2784349 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RKQ76_RS13330 (RKQ76_13340) pilY2 2784346..2784828 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  RKQ76_RS13335 (RKQ76_13345) pilY1 2784841..2788695 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ76_RS13340 (RKQ76_13350) pilX 2788707..2789525 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ76_RS13345 (RKQ76_13355) pilW 2789522..2790523 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKQ76_RS13350 (RKQ76_13360) pilV 2790524..2791084 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKQ76_RS13355 (RKQ76_13365) fimU 2791078..2791551 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ76_RS13360 (RKQ76_13370) ispH 2791721..2792671 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ76_RS13365 (RKQ76_13375) gmk 2792794..2793423 (+) 630 WP_000015937.1 guanylate kinase -
  RKQ76_RS13370 (RKQ76_13380) rpoZ 2793496..2793774 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ76_RS13375 (RKQ76_13385) - 2793813..2793942 (+) 130 Protein_2623 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=880905 RKQ76_RS13340 WP_000149374.1 2788707..2789525(-) (pilX) [Acinetobacter baumannii strain XH1055]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=880905 RKQ76_RS13340 WP_000149374.1 2788707..2789525(-) (pilX) [Acinetobacter baumannii strain XH1055]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993