Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   RLO20_RS10655 Genome accession   NZ_CP134538
Coordinates   49061..49159 (+) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 44061..54159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS00265 (RLO20_00265) purE 44091..44579 (+) 489 WP_012678776.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RLO20_RS00270 (RLO20_00270) purK 44566..45639 (+) 1074 WP_012678777.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RLO20_RS00275 (RLO20_00275) - 45654..45878 (+) 225 WP_012678778.1 hypothetical protein -
  RLO20_RS00280 (RLO20_00280) purB 46475..47767 (+) 1293 WP_042357336.1 adenylosuccinate lyase -
  RLO20_RS00285 (RLO20_00285) - 48065..48978 (+) 914 Protein_35 helix-turn-helix domain-containing protein -
  RLO20_RS10655 comS 49061..49159 (+) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  RLO20_RS00290 (RLO20_00290) ruvB 49193..50200 (+) 1008 WP_012678780.1 Holliday junction branch migration DNA helicase RuvB -
  RLO20_RS00295 (RLO20_00295) - 50441..50899 (+) 459 WP_012678781.1 low molecular weight protein-tyrosine-phosphatase -
  RLO20_RS00300 (RLO20_00300) - 50905..51306 (+) 402 WP_012514718.1 MORN repeat-containing protein -
  RLO20_RS00305 (RLO20_00305) - 51303..53084 (+) 1782 WP_012678782.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=880887 RLO20_RS10655 WP_021320241.1 49061..49159(+) (comS) [Streptococcus equi subsp. equi strain XJ5012]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=880887 RLO20_RS10655 WP_021320241.1 49061..49159(+) (comS) [Streptococcus equi subsp. equi strain XJ5012]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375