Detailed information NTG0880858

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: WMY90_RS04680
• Genome accession: NZ_CP150875
• Coordinates: 920810..921736 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus strain TCI125
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 915810..926736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMY90_RS04650 (WMY90_04650)	-	915888..916682 (-)	795	WP_022096877.1	HAD family hydrolase	-
WMY90_RS04655 (WMY90_04655)	-	916866..917243 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
WMY90_RS04660 (WMY90_04660)	-	917248..917946 (+)	699	WP_022096876.1	ABC transporter ATP-binding protein	-
WMY90_RS04665 (WMY90_04665)	-	917958..918743 (+)	786	WP_002951425.1	hypothetical protein	-
WMY90_RS04670 (WMY90_04670)	-	918793..919722 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
WMY90_RS04675 (WMY90_04675)	amiE	919715..920800 (-)	1086	WP_002946408.1	ABC transporter ATP-binding protein	Regulator
WMY90_RS04680 (WMY90_04680)	amiD	920810..921736 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
WMY90_RS04685 (WMY90_04685)	amiC	921736..923229 (-)	1494	WP_260215011.1	ABC transporter permease	Regulator
WMY90_RS04690 (WMY90_04690)	amiA	923291..925258 (-)	1968	WP_096811568.1	peptide ABC transporter substrate-binding protein	Regulator
WMY90_RS04695 (WMY90_04695)	-	925462..925652 (-)	191	Protein_921	IS3 family transposase	-
WMY90_RS04700 (WMY90_04700)	-	925643..925813 (-)	171	WP_014608546.1	hypothetical protein	-
WMY90_RS04705 (WMY90_04705)	-	925826..926062 (-)	237	WP_308123564.1	ABC transporter ATP-binding protein	-
WMY90_RS04710 (WMY90_04710)	-	926042..926402 (-)	361	Protein_924	TatD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=880858 WMY90_RS04680 WP_002946409.1 920810..921736(-) (amiD) [Streptococcus thermophilus strain TCI125]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=880858 WMY90_RS04680 WP_002946409.1 920810..921736(-) (amiD) [Streptococcus thermophilus strain TCI125]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964