Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   WMY90_RS04305 Genome accession   NZ_CP150875
Coordinates   837906..838586 (-) Length   226 a.a.
NCBI ID   WP_002945967.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 832906..843586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS04275 (WMY90_04275) - 833114..833563 (-) 450 WP_011226219.1 cytidine deaminase -
  WMY90_RS04280 (WMY90_04280) - 833574..833753 (-) 180 Protein_840 ABC transporter permease -
  WMY90_RS04285 (WMY90_04285) - 833755..833952 (-) 198 Protein_841 YkgJ family cysteine cluster protein -
  WMY90_RS04290 (WMY90_04290) - 834037..836037 (-) 2001 WP_341276301.1 ABC transporter permease -
  WMY90_RS04295 (WMY90_04295) - 836039..836797 (-) 759 WP_022097082.1 ABC transporter ATP-binding protein -
  WMY90_RS04300 (WMY90_04300) - 836942..837913 (-) 972 WP_179967088.1 sensor histidine kinase -
  WMY90_RS04305 (WMY90_04305) braR 837906..838586 (-) 681 WP_002945967.1 response regulator transcription factor Regulator
  WMY90_RS04310 (WMY90_04310) - 839037..839617 (+) 581 Protein_846 xanthine phosphoribosyltransferase -
  WMY90_RS04315 (WMY90_04315) - 839617..840884 (+) 1268 Protein_847 nucleobase:cation symporter-2 family protein -
  WMY90_RS04320 (WMY90_04320) - 841012..842361 (+) 1350 WP_014621757.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26150.55 Da        Isoelectric Point: 5.0092

>NTDB_id=880852 WMY90_RS04305 WP_002945967.1 837906..838586(-) (braR) [Streptococcus thermophilus strain TCI125]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEVVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=880852 WMY90_RS04305 WP_002945967.1 837906..838586(-) (braR) [Streptococcus thermophilus strain TCI125]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTCGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGTAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504