Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RLO20_RS03090 Genome accession   NZ_CP134538
Coordinates   632047..633849 (+) Length   600 a.a.
NCBI ID   WP_012679215.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 630236..631578 632047..633849 flank 469


Gene organization within MGE regions


Location: 630236..633849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS03080 (RLO20_03080) - 630236..631578 (+) 1343 WP_165626751.1 IS3 family transposase -
  RLO20_RS03085 (RLO20_03085) - 631596..632057 (+) 462 WP_231198133.1 hypothetical protein -
  RLO20_RS03090 (RLO20_03090) pepF 632047..633849 (+) 1803 WP_012679215.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69116.85 Da        Isoelectric Point: 4.6328

>NTDB_id=880845 RLO20_RS03090 WP_012679215.1 632047..633849(+) (pepF) [Streptococcus equi subsp. equi strain XJ5012]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLLAAIEAARQQAGHLLDSSSSLLDITELHLELARRVEKVYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQEAYQAFLAETPELTVYDHFFDKLFKTREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLENVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFRVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=880845 RLO20_RS03090 WP_012679215.1 632047..633849(+) (pepF) [Streptococcus equi subsp. equi strain XJ5012]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACAGACGCAGCTTGGGA
GACAGAGGCAGATAGTCTGCTGGCAGCAATTGAGGCTGCAAGGCAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCATTTGGAGCTGGCTCGTCGTGTTGAAAAGGTTTATGTTTATGCTAGCATGAAAAATGAT
CAGGATACGACAGTTGCCAAGTATCAAGAATATCAAGCTAAGGCCTCTGGTATTTATGCTAAATTTAGTGAAGCCTTTTC
ATTCTATGAGCCAGAATTTATGGCCTTAAGTCAGGAAGCCTACCAAGCCTTCTTAGCTGAGACACCGGAGCTAACAGTCT
ATGACCATTTCTTTGATAAATTGTTCAAGACGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCGAAAGACCGCAAGGTGCGTAGGGCTG
CCTATGAAGCCATGTATAGTACTTATGAGCAATTCCAGCACACCTATGCTAAAACCCTGCAAACCAATGTAAAGGTGCAA
AATTATAAGGCACGTGTTCACAAATATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAAACGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGCCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACGCTAGTGCATGAGACAGGCCATAGCCTGCACTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACTGAGGC
CTTGTTACATGAGGTGCAGGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGTGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAATCTCTATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATCGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACCTATCTGAAGTCTGGAAATTCAGATTATCCGCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGTGATTACCTAGAAGCAGCCTTTAGGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.833

100

0.728