Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RLO20_RS02710 Genome accession   NZ_CP134538
Coordinates   549378..550415 (+) Length   345 a.a.
NCBI ID   WP_012679161.1    Uniprot ID   C0MBZ2
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 544378..555415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS02685 (RLO20_02685) - 544688..546019 (+) 1332 WP_012679156.1 dipeptidase -
  RLO20_RS02690 (RLO20_02690) arcC 546037..546987 (+) 951 WP_012679157.1 carbamate kinase -
  RLO20_RS02695 (RLO20_02695) asnA 547207..548199 (+) 993 WP_012679158.1 aspartate--ammonia ligase -
  RLO20_RS02700 (RLO20_02700) rsmD 548371..548910 (+) 540 WP_012679159.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RLO20_RS02705 (RLO20_02705) coaD 548900..549400 (+) 501 WP_012679160.1 pantetheine-phosphate adenylyltransferase -
  RLO20_RS02710 (RLO20_02710) sepM 549378..550415 (+) 1038 WP_012679161.1 SepM family pheromone-processing serine protease Regulator
  RLO20_RS02715 (RLO20_02715) - 550977..551591 (+) 615 WP_317608679.1 YutD family protein -
  RLO20_RS02720 (RLO20_02720) rlmN 551595..552677 (+) 1083 WP_012679163.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RLO20_RS02725 (RLO20_02725) - 553959..554489 (+) 531 WP_012515230.1 Dps family protein -
  RLO20_RS02730 (RLO20_02730) - 554862..555095 (+) 234 WP_012515231.1 YqgQ family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37438.09 Da        Isoelectric Point: 9.4223

>NTDB_id=880842 RLO20_RS02710 WP_012679161.1 549378..550415(+) (sepM) [Streptococcus equi subsp. equi strain XJ5012]
MKTIKKIKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=880842 RLO20_RS02710 WP_012679161.1 549378..550415(+) (sepM) [Streptococcus equi subsp. equi strain XJ5012]
ATGAAAACAATAAAAAAAATTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATAAGG
AAAAGGGAGCTTATCAGTTTGTTGTAGTGAGCCTCAGTCGGGCCACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGACTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTATCAGGCCCTTACTCTAGCAGGCAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGTAAA
ACATTTACAACGTCTGCCGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACTGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGCATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0MBZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.855

100

0.699