Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   WMY90_RS00830 Genome accession   NZ_CP150875
Coordinates   156930..158666 (+) Length   578 a.a.
NCBI ID   WP_011225637.1    Uniprot ID   Q5M5F0
Organism   Streptococcus thermophilus strain TCI125     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 151930..163666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS00785 (WMY90_00785) - 152338..152475 (+) 138 WP_172838673.1 hypothetical protein -
  WMY90_RS00790 (WMY90_00790) - 152655..152906 (+) 252 WP_002947285.1 hypothetical protein -
  WMY90_RS00795 (WMY90_00795) - 153197..153391 (+) 195 WP_011680862.1 hypothetical protein -
  WMY90_RS00800 (WMY90_00800) - 153453..153707 (+) 255 WP_002947289.1 ABC transporter permease -
  WMY90_RS00805 (WMY90_00805) - 153708..153812 (+) 105 WP_232972145.1 ABC transporter permease -
  WMY90_RS00810 (WMY90_00810) - 153793..154215 (+) 423 WP_022096947.1 FtsX-like permease family protein -
  WMY90_RS00815 (WMY90_00815) - 154212..154439 (+) 228 WP_232089295.1 hypothetical protein -
  WMY90_RS00820 (WMY90_00820) rplJ 154730..155233 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  WMY90_RS00825 (WMY90_00825) rplL 155308..155676 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  WMY90_RS00830 (WMY90_00830) rcrP 156930..158666 (+) 1737 WP_011225637.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS00835 (WMY90_00835) rcrQ 158679..160466 (+) 1788 WP_011225638.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS00840 (WMY90_00840) queA 160564..161607 (-) 1044 WP_011225639.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WMY90_RS00845 (WMY90_00845) - 161757..162458 (+) 702 WP_022096948.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64689.59 Da        Isoelectric Point: 5.7785

>NTDB_id=880828 WMY90_RS00830 WP_011225637.1 156930..158666(+) (rcrP) [Streptococcus thermophilus strain TCI125]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=880828 WMY90_RS00830 WP_011225637.1 156930..158666(+) (rcrP) [Streptococcus thermophilus strain TCI125]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACAGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATTATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACTTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369