Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   RKV28_RS00270 Genome accession   NZ_CP134534
Coordinates   58765..60393 (-) Length   542 a.a.
NCBI ID   WP_001186602.1    Uniprot ID   Q9XB94
Organism   Staphylococcus aureus strain KNIH_5618     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 37475..61764 58765..60393 within 0


Gene organization within MGE regions


Location: 37475..61764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS00155 mecI 37475..37846 (-) 372 WP_000369211.1 mecA-type methicillin resistance repressor MecI -
  RKV28_RS00160 mecR1 37846..39603 (-) 1758 WP_000952923.1 beta-lactam sensor/signal transducer MecR1 -
  RKV28_RS00165 mecA 39700..41709 (+) 2010 WP_114914741.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  RKV28_RS00170 - 41755..42183 (-) 429 WP_000872606.1 MaoC family dehydratase -
  RKV28_RS00175 - 42280..43023 (-) 744 WP_000958858.1 glycerophosphoryl diester phosphodiesterase -
  RKV28_RS00180 - 43780..44169 (-) 390 WP_020444595.1 hydroxymethylglutaryl-CoA synthase -
  RKV28_RS00185 - 44205..44879 (+) 675 WP_001106057.1 IS6-like element IS257 family transposase -
  RKV28_RS00190 - 45120..46250 (+) 1131 WP_010922808.1 ROK family transcriptional regulator -
  RKV28_RS00195 cstB 46364..47698 (-) 1335 Protein_36 persulfide dioxygenase-sulfurtransferase CstB -
  RKV28_RS00200 - 47731..48795 (-) 1065 WP_000438836.1 DsrE/DsrF/DrsH-like family protein -
  RKV28_RS00205 cstR 48931..49191 (+) 261 WP_000220507.1 persulfide-sensing transcriptional repressor CstR -
  RKV28_RS00210 - 49191..49829 (+) 639 Protein_39 sulfite exporter TauE/SafE family protein -
  RKV28_RS00215 - 49883..49942 (-) 60 Protein_40 DNA repair protein RadC -
  RKV28_RS00220 - 50174..50836 (-) 663 WP_001092058.1 class I SAM-dependent methyltransferase -
  RKV28_RS14775 - 51228..51287 (+) 60 WP_010959190.1 erythromycin resistance leader peptide -
  RKV28_RS00225 erm(A) 51370..52101 (+) 732 WP_001072201.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) -
  RKV28_RS00230 - 52227..53009 (-) 783 WP_000067268.1 aminoglycoside nucleotidyltransferase ANT(9)-Ia -
  RKV28_RS00235 - 53160..53537 (-) 378 WP_000361059.1 DUF6262 family protein -
  RKV28_RS00240 - 53544..55436 (-) 1893 WP_001557544.1 site-specific integrase -
  RKV28_RS00245 - 55433..56518 (-) 1086 WP_000868132.1 tyrosine-type recombinase/integrase -
  RKV28_RS00250 - 56637..56954 (-) 318 WP_000659050.1 JAB domain-containing protein -
  RKV28_RS00255 - 56975..57481 (-) 507 WP_001092169.1 DUF1643 domain-containing protein -
  RKV28_RS00260 - 57499..57810 (-) 312 WP_000700853.1 DUF960 family protein -
  RKV28_RS00265 - 57897..58247 (-) 351 WP_000859155.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RKV28_RS00270 ccrB 58765..60393 (-) 1629 WP_001186602.1 cassette chromosome recombinase CcrB Machinery gene
  RKV28_RS00275 ccrA 60415..61764 (-) 1350 WP_000815646.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62664.84 Da        Isoelectric Point: 9.8600

>NTDB_id=880768 RKV28_RS00270 WP_001186602.1 58765..60393(-) (ccrB) [Staphylococcus aureus strain KNIH_5618]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=880768 RKV28_RS00270 WP_001186602.1 58765..60393(-) (ccrB) [Staphylococcus aureus strain KNIH_5618]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCATCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9XB94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

100

100

1